Edinburgh
Pathway Editor
EPE
is a visual editor designed for annotation, visualisation and
presentation of wide variety of biological networks, including
metabolic, genetic and signal transduction pathways. It is based on a
metadata driven architecture, which makes it very flexible in drawing,
storing, presenting and exporting information related to the network of
interest. It allows visual representation to field standards (SBGN),
storage and retrieval of annotation such as kinetic and other numerical
data in relational databases (local and remote for enterprise
development) and links graphical objects to external databases and web
resources to show all available information on demand.
EPE2
EPE is currently being rewritten to allow new functionality to be
added, and is available for download from the page.
Development work on EPE1 has ceased. Some of the improvements of EPE2
will be :
- Configurable editing behaviour
- Support for the recently released Level1 SBGN Process Diagram notation.
- A more robust and less error-prone graphical editor
- A plugin mechanism for addition of new notations.
For more information regarding EPE2, please contact Stuart
Moodie. |