Printer-friendly versionSend by emailPDF version

IUPHAR-DB: updated database content and new features.

TitleIUPHAR-DB: updated database content and new features.
Publication TypeJournal Article
Year of Publication2013
AuthorsSharman, JL, Benson, HE, Pawson, AJ, Lukito, V, Mpamhanga, CP, Bombail, V, Davenport, AP, Peters, JA, Spedding, M, Harmar, AJ
Corporate AuthorsNC-IUPHAR,
JournalNucleic Acids Res
Volume41
IssueDatabase issue
PaginationD1083-8
Date Published2013 Jan
ISSN1362-4962
Abstract

The International Union of Basic and Clinical Pharmacology (IUPHAR) database, IUPHAR-DB (http://www.iuphar-db.org) is an open access, online database providing detailed, expert-driven annotation of the primary literature on human and rodent receptors and other drug targets, together with the substances that act on them. The present release includes information on the products of 646 genes from four major protein classes (G protein-coupled receptors, nuclear hormone receptors, voltage- and ligand-gated ion channels) and ∼3180 bioactive molecules (endogenous ligands, licensed drugs and key pharmacological tools) that interact with them. We have described previously the classification and curation of data for small molecule ligands in the database; in this update we have annotated 366 endogenous peptide ligands with their amino acid sequences, post-translational modifications, links to precursor genes, species differences and relationships with other molecules in the database (e.g. those derived from the same precursor). We have also matched targets with their endogenous ligands (peptides and small molecules), with particular attention paid to identifying bioactive peptide ligands generated by post-translational modification of precursor proteins. Other improvements to the database include enhanced information on the clinical relevance of targets and ligands in the database, more extensive links to other databases and a pilot project for the curation of enzymes as drug targets.

DOI10.1093/nar/gks960
Alternate JournalNucleic Acids Res.
PubMed ID23087376
Grant List099156/Z/12/Z / / Wellcome Trust / United Kingdom
RE/08/001 / / British Heart Foundation / United Kingdom

Add new comment

Filtered HTML

  • Web page addresses and e-mail addresses turn into links automatically.
  • Allowed HTML tags: <a> <em> <strong> <cite> <blockquote> <code> <ul> <ol> <li> <dl> <dt> <dd>
  • Lines and paragraphs break automatically.

Plain text

  • No HTML tags allowed.
  • Web page addresses and e-mail addresses turn into links automatically.
  • Lines and paragraphs break automatically.
CAPTCHA
This question is for testing whether you are a human visitor and to prevent automated spam submissions.
Image CAPTCHA
Enter the characters shown in the image.