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ArkMAP is a desktop application that allows users to draw, align and explore genetic maps and regions of conserved synteny. Maps of interest can be selected and downloaded from either the ArkDB database by browsing the available maps by species, analysis, chromosome etc. or from Ensembl datasources: gene-annotated chromosome assemblies may be downloaded for any of the vertebrate species held in Ensembl or other taxa held in EnsemblGenomes. Local mapping data may also be loaded and displayed by the user.